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1

NMR assignments of the C-terminal domain of human polypeptide release factor eRF1

Alexey B. Mantsyzov, Elena V. Ivanova, Berry Birdsall, Petr M. Kolosov, Lev L. Kisselev, Vladimir I. Polshakov

Journal:

Biomolecular NMR Assignments

Year:

2007

Language:

english

File:

PDF, 188 KB

english, 2007

2

pH-responsive modulation of insulin aggregation and structural transformation of the aggregates

Smirnova, Ekaterina, Safenkova, Irina, Stein-Margolina, Vita, Shubin, Vladimir, Polshakov, Vladimir, Gurvits, Bella

Journal:

Year:

2015

Language:

english

File:

PDF, 2.35 MB

english, 2015

3

New conjugates of polyene macrolide amphotericin B with benzoxaboroles: synthesis and properties

Tevyashova, Anna N, Korolev, Alexander M, Trenin, Aleksey S, Dezhenkova, Lyubov G, Shtil, Alexander A, Polshakov, Vladimir I, Savelyev, Oleg Yu, Olsufyeva, Evgenia N

Journal:

The Journal of Antibiotics

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

4

Nybomycin-producing Streptomyces isolated from carpenter ant Camponotus vagus

Zakalyukina, Yuliya V., Birykov, Mikhail V., Lukianov, Dmitrii A., Shiriaev, Dmitrii I., Komarova, Ekaterina S., Skvortsov, Dmitry A., Kostyukevich, Yury, Tashlitsky, Vadim N., Polshakov, Vladimir I.,

Journal:

Year:

2019

Language:

english

File:

PDF, 5.94 MB

english, 2019

5

Quantitative StructureâActivity Relationship Machine Learning Models and their Applications for Identifying Viral 3CLpro- and RdRp-Targeting Compounds as Potential Therapeutics for COVID-19 and Related Viral Infections

Ivanov, Julian, Polshakov, Dmitrii, Kato-Weinstein, Junko, Zhou, Qiongqiong, Li, Yingzhu, Granet, Roger, Garner, Linda, Deng, Yi, Liu, Cynthia, Albaiu, Dana, Wilson, Jeffrey, Aultman, Christopher

Journal:

Year:

2020

File:

PDF, 4.74 MB

2020

6

ChemInform Abstract: Dihydrofolate Reductase: Structural Aspects of Mechanisms of Enzyme Catalysis and Inhibition

V. I. Polshakov

Journal:

Year:

2002

File:

PDF, 24 KB

2002

7

Determination of Stereospecific Assignments, Torsion-Angle Constraints, and Rotamer Populations in Proteins Using the Program Anglesearch

V.I. Polshakov, T.A. Frenkiel, B. Birdsall, A. Soteriou, J. Feeney

Journal:

Journal of Magnetic Resonance, Series B

Year:

1995

File:

PDF, 917 KB

1995

8

Towards understanding the origins of the different specificities of binding the reduced (NADPH) and oxidised (NADP+) forms of nicotinamide adenine dinucleotide phosphate coenzyme to dihydrofolate reductase

Vladimir I Polshakov, Rodolfo R Biekofsky, Berry Birdsall, James Feeney

Journal:

Journal of Molecular Structure

Year:

2002

Language:

english

File:

PDF, 246 KB

english, 2002

9

Solution Structure of Human Dihydrofolate Reductase in its Complex with Trimethoprim and NADPH

Nadezhda V. Kovalevskaya, Yegor D. Smurnyy, Vladimir I. Polshakov, Berry Birdsall, Alan F. Bradbury, Tom Frenkiel, James Feeney

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 263 KB

english, 2005

10

NMR Assignments of the Middle Domain of Human Polypeptide Release Factor eRF1

Elena V. Ivanova, Peter M. Kolosov, Berry Birdsall, Lev L. Kisselev, Vladimir I. Polshakov

Journal:

Journal of Biomolecular NMR

Year:

2006

Language:

english

File:

PDF, 118 KB

english, 2006

11

Structural factors determining the binding selectivity of the antibacterial drug trimethoprim to dihydrofolate reductase

N. V. Kovalevskaya, E. D. Smurnyi, B. Birdsall, J. Feeney, V. I. Polshakov

Journal:

Pharmaceutical Chemistry Journal

Year:

2007

Language:

english

File:

PDF, 249 KB

english, 2007

12

E/Z(C=C)-Isomerization of enamines of 3-formyl-4-hydroxycoumarin induced by organic solvents

V. F. Traven, I. V. Ivanov, V. S. Lebedev, T. A. Chibisova, B. G. Milevskii, N. P. Solov’eva, V. I. Polshakov, G. G. Alexandrov, O. N. Kazheva, O. A. Dyachenko

Journal:

Russian Chemical Bulletin

Year:

2010

Language:

english

File:

PDF, 304 KB

english, 2010

13

Z/E(C=C)-isomerization of coumarin enamines induced by organic solvents

Valery F. Traven, Ivan V. Ivanov, Victor S. Lebedev, Boris G. Milevskii, Tat’yana A. Chibisova, Natalya P. Solov’eva, Vladimir I. Polshakov, Olga N. Kazheva, Grigorii G. Alexandrov, Oleg A. Dyachenko

Journal:

Mendeleev Communications

Year:

2009

Language:

english

File:

PDF, 316 KB

english, 2009

14

Eukaryotic class 1 translation termination factor eRF1 − the NMR structure and dynamics of the middle domain involved in triggering ribosome-dependent peptidyl-tRNA hydrolysis

Elena V. Ivanova, Peter M. Kolosov, Berry Birdsall, Geoff Kelly, Annalisa Pastore, Lev L. Kisselev, Vladimir I. Polshakov

Journal:

Year:

2007

Language:

english

File:

PDF, 1.16 MB

english, 2007

15

NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor

Alexey B. Mantsyzov, Elena V. Ivanova, Berry Birdsall, Elena Z. Alkalaeva, Polina N. Kryuchkova, Geoff Kelly, Ludmila Y. Frolova, Vladimir I. Polshakov

Journal:

Year:

2010

Language:

english

File:

PDF, 993 KB

english, 2010

16

Interface of the interaction of the middle domain of human translation termination factor eRF1 with eukaryotic ribosomes

E. V. Ivanova, E. Z. Alkalaeva, B. Birdsall, P. M. Kolosov, V. I. Polshakov, L. L. Kisselev

Journal:

Molecular Biology

Year:

2008

Language:

english

File:

PDF, 419 KB

english, 2008

17

Optimization of the methods for small peptide solution structure determination by NMR spectroscopy

A. N. Istrate, A. B. Mantsyzov, S. A. Kozin, V. I. Polshakov

Journal:

Molecular Biology

Year:

2010

Language:

english

File:

PDF, 516 KB

english, 2010

18

Laser control of the structure of a photosensitive substrate for enzymatic reaction

N. N. Brandt, O. O. Brovko, A. Yu. Chikishev, K. Itoh, S. I. Lebedenko, V. I. Polshakov, I. K. Sakodynskaya

Journal:

Year:

2007

Language:

english

File:

PDF, 217 KB

english, 2007

19

Validation of a new restraint docking method for solution structure determinations of protein–ligand complexes

Vladimir I. Polshakov, William D. Morgan, Berry Birdsall, James Feeney

Journal:

Journal of Biomolecular NMR

Year:

1999

Language:

english

File:

PDF, 146 KB

english, 1999

20

Dihydrofolate reductase: structural aspects of mechanisms of enzyme catalysis and inhibition

V. I. Polshakov

Journal:

Russian Chemical Bulletin

Year:

2001

Language:

english

File:

PDF, 585 KB

english, 2001

21

Letter to the Editor: NMR-based solution structure of the complex ofLactobacillus caseidihydrofolate reductase with trimethoprim and NADPH

Vladimir I. Polshakov, Eugeni G. Smirnov, Berry Birdsall, Geoff Kelly, James Feeney

Journal:

Journal of Biomolecular NMR

Year:

2002

Language:

english

File:

PDF, 156 KB

english, 2002

22

Structure and dynamics in solution of the complex of lactobacillus casei dihydrofolate reductase with the new lipophilic antifolate drug trimetrexate

Vladimir I. Polshakov, Berry Birdsall, Thomas A. Frenkiel, Angelo R. Gargaro, James Feeney

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1.42 MB

english, 1999

23

A study of 2-azido-3,5-dichlorobiphenyl by nano- and picosecond laser flash photolysis and computational methods

Gritsan, Nina P., Polshakov, Dmitrii A., Tsao, Meng-Lin, Platz, Matthew S.

Journal:

Photochemical & Photobiological Sciences

Year:

2005

Language:

english

File:

PDF, 544 KB

english, 2005

24

Structure and dynamics in solution of the stop codon decoding N-terminal domain of the human polypeptide chain release factor eRF1

Vladimir I. Polshakov, Boris D. Eliseev, Berry Birdsall, Ludmila Yu. Frolova

Journal:

Protein Science

Year:

2012

Language:

english

File:

PDF, 488 KB

english, 2012

25

The use of PM3 SCF MO quantum mechanical calculations to refine NMR-determined structures of complexes of antifolate drugs with dihydrofolate reductase in solution

Vladimir I. Polshakov, Berry Birdsall, Michael J. Gradwell, James Feeney

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1995

Language:

english

File:

PDF, 868 KB

english, 1995

26

NMR-Based Structural Studies of the pNR-2/pS2 Single Domain Trefoil Peptide : Similarities to Porcine Spasmolytic Peptide and Evidence for a Monomeric Structure

Vladimir I. Polshakov, Thomas A. Frenkiel, Bruce Westley, Mark Chadwick, Felicity May, Mark D. Carr, James Feeney

Journal:

Year:

1995

Language:

english

File:

PDF, 881 KB

english, 1995

27

NMR Detection of Arginine-Ligand Interactions in Complexes of Lactobacillus casei Dihydrofolate Reductase

Angelo R. Gargaro, Thomas A. Frenkiel, Pedro M. Nieto, Berry Birdsall, Vladimir I. Polshakov, William D. Morgan, James Feeney

Journal:

Year:

1996

Language:

english

File:

PDF, 537 KB

english, 1996

28

High-resolution solution structure of human pNR-2/ps2: A single trefoil motif protein

Vladimir I Polshakov, Mark A Williams, Angelo R Gargaro, Thomas A Frenkiel, Bruce R Westley, Mark P Chadwick, Felicity E.B May, James Feeney

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 567 KB

english, 1997

29

The solution structure of the complex of Lactobacillus casei dihydrofolate reductase with methotrexate

Angelo R. Gargaro, Alice Soteriou, Thomas A. Frenkiel, Christopher J. Bauer, Berry Birdsall, Vladimir I. Polshakov, Igor L. Barsukov, Gordon C.K. Roberts, James Feeney

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 948 KB

english, 1998

30

Distribution coefficient of rifabutin in liposome/water system as measured by different methods

Vitaly V. Vostrikov, Alla A. Selishcheva, Galina M. Sorokoumova, Yulia N. Shakina, Vitaly I. Shvets, Oleg Yu. Savel’ev, Vladimir I. Polshakov

Journal:

European Journal of Pharmaceutics and Biopharmaceutics

Year:

2008

Language:

english

File:

PDF, 278 KB

english, 2008

31

Effects of Co-operative Ligand Binding on Protein Amide NH Hydrogen Exchange

Vladimir I. Polshakov, Berry Birdsall, James Feeney

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 427 KB

english, 2006

32

NMR Solution Structure of Rat Aβ(1–16): Toward Understanding the Mechanism of Rats' Resistance to Alzheimer's Disease

Istrate, Andrey N., Tsvetkov, Philipp O., Mantsyzov, Alexey B., Kulikova, Alexandra A., Kozin, Sergey A., Makarov, Alexander A., Polshakov, Vladimir I.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 722 KB

english, 2012

33

Z/E (C=C)-isomerization and fluorescence modulation of imines of 7-N,N-dialkylamino-4-hydroxy-3-formylcoumarins in organic solvents

Traven, Valery F., Ivanov, Ivan V., Lebedev, Victor S., Solov’eva, Natalya P., Polshakov, Vladimir I., Kazheva, Olga N., Alexandrov, Grigorii G., Dyachenko, Oleg A.

Journal:

Heterocyclic Communications

Year:

2010

Language:

english

File:

PDF, 332 KB

english, 2010

34

NMR Structures of Apo L. casei Dihydrofolate Reductase and Its Complexes with Trimethoprim and NADPH: Contributions to Positive Cooperative Binding from Ligand-Induced Refolding, Conformational Changes, and Interligand Hydrophobic Interactions

Feeney, James, Birdsall, Berry, Kovalevskaya, Nadezhda V., Smurnyy, Yegor. D., Navarro Peran, Emna M., Polshakov, Vladimir I.

Journal:

Year:

2011

Language:

english

File:

PDF, 3.21 MB

english, 2011

35

NMR Studies of Ligand Carboxylate Group Interactions with Arginine Residues in Complexes of Lactobacillus casei Dihydrofolate Reductase with Substrates and Substrate Analogues †

Birdsall, Berry, Polshakov, Vladimir I., Feeney, James

Journal:

Year:

2000

Language:

english

File:

PDF, 168 KB

english, 2000

36

Backbone1H,13C and15N resonance assignments of the human eukaryotic release factor eRF1

Polshakov, Vladimir I., Eliseev, Boris D., Frolova, Ludmila Yu, Chang, Chi-Fon, Huang, Tai-huang

Journal:

Biomolecular NMR Assignments

Year:

2015

Language:

english

File:

PDF, 576 KB

english, 2015

37

Solvent Reorganization Controls the Rate of Proton Transfer from Neat Alcohol Solvents to Singlet Diphenylcarbene

Peon, Jorge, Polshakov, Dmitrii, Kohler, Bern

Journal:

Journal of the American Chemical Society

Year:

2002

Language:

english

File:

PDF, 143 KB

english, 2002

38

Characterization of Rates of Ring-Flipping in Trimethoprim in Its Ternary Complexes with Lactobacillus casei Dihydrofolate Reductase and Coenzyme Analogues †

Polshakov, Vladimir I., Birdsall, Berry, Feeney, James

Journal:

Year:

1999

Language:

english

File:

PDF, 113 KB

english, 1999

39

Dihydrofolate reductase; sequential resonance assignments using 2D and 3D NMR and secondary structure determination in solution

Carr, M. D., Birdsall, B., Frenkiel, T. A., Bauer, C. J., Jimenez-Barbero, J., Polshakov, V. I., McCormick, J. E., Roberts, G. C. K., Feeney, J.

Journal:

Year:

1991

Language:

english

File:

PDF, 1.21 MB

english, 1991

40

Solution Structure of Bound Trimethoprim in Its Complex with Lactobacillus casei Dihydrofolate Reductase

Martorell, G., Gradwell, M. J., Birdsall, B., Bauer, C. J., Frenkiel, T. A., Cheung, H. T. A., Polshakov, V. I., Kuyper, L., Feeney, J.

Journal:

Year:

1994

Language:

english

File:

PDF, 1.21 MB

english, 1994

41

Photoaffinity Labeling with 8-Azidoadenosine and Its Derivatives: Chemistry of Closed and Opened Adenosine Diazaquinodimethanes †

Polshakov, Dmitrii, Rai, Saroj, Wilson, R. Marshall, Mack, Eric T., Vogel, Martin, Krause, Jeanette A., Burdzinski, Gotard, Platz, Matthew S.

Journal:

Year:

2005

Language:

english

File:

PDF, 316 KB

english, 2005

42

Phosphorylation of Ser8 promotes zinc-induced dimerization of the amyloid-β metal-binding domain

Kulikova, Alexandra A., Tsvetkov, Philipp O., Indeykina, Maria I., Popov, Igor A., Zhokhov, Sergey S., Golovin, Andrey V., Polshakov, Vladimir I., Kozin, Sergey A., Nudler, Evgeny, Makarov, Alexander

Journal:

Molecular BioSystems

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

43

Solution Structure of a Brodimoprim Analog in Its Complex with Lactobacillus casei Dihydrofolate Reductase

Morgan, William D., Birdsall, Berry, Polshakov, Vladimir I., Sali, Dasa, Kompis, Ivan, Feeney, James

Journal:

Year:

1995

Language:

english

File:

PDF, 2.47 MB

english, 1995

44

Structural Studies and Anticancer Activity of a Novel Class of β-Peptides

Kudryavtsev, Konstantin V., Yu, Chia-Chun, Ivantcova, Polina M., Polshakov, Vladimir I., Churakov, Andrei V., Bräse, Stefan, Zefirov, Nikolay S., Guh, Jih-Hwa

Journal:

Chemistry – An Asian Journal

Year:

2015

Language:

english

File:

PDF, 2.10 MB

english, 2015

45

NMR screening of potential inhibitors of methionine γ-lyase fromCitrobacter freundii

Batuev, E. A., Lisunov, A. Y., Morozova, E. A., Klochkov, V. V., Anufrieva, N. V., Demidkina, T. V., Polshakov, V. I.

Journal:

Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

46

The English (H6R) familial Alzheimer's disease mutation facilitates zinc-induced dimerization of the amyloid-β metal-binding domain

Kozin, S. A., Kulikova, A. A., Istrate, A. N., Tsvetkov, P. O., Zhokhov, S. S., Mezentsev, Y. V., Kechko, O. I., Ivanov, A. S., Polshakov, V. I., Makarov, A. A.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

47

Intermolecular interactions in rifabutin—2-hydroxypropyl-β-cyclodextrin—water solutions

Anshakova, A. V., Yermolenko, Yu. V., Konyukhov, V. Yu., Polshakov, V. I., Maksimenko, O. O., Gelperina, S. E.

Journal:

Russian Journal of Physical Chemistry A, Focus on Chemistry

Year:

2015

Language:

english

File:

PDF, 323 KB

english, 2015

48

Novel Nanoscale Organic Materials for Optimal Photovoltaic Functions

Chen, Lin X, Polshakov, Dmitrii, Xiao, Shengqiang, Liang, Yongye, Yu, Luping

Journal:

MRS Proceedings

Year:

2006

Language:

english

File:

PDF, 398 KB

english, 2006

49

NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor

Mantsyzov, Alexey B., Ivanova, Elena V., Birdsall, Berry, Alkalaeva, Elena Z., Kryuchkova, Polina N., Kelly, Geoff, Frolova, Ludmila Y., Polshakov, Vladimir I.

Journal:

Year:

2010

Language:

english

File:

PDF, 995 KB

english, 2010

50

Discovering frequent topological structures from graph datasets

R. Jin, C. Wang, D. Polshakov, S. Parthasarathy, G. Agrawal

Year:

2005

Language:

english

File:

PDF, 1.35 MB

english, 2005